Glyma06g01570 - SoyBase

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Report for Sequence Feature Glyma06g01570

Feature Type:	gene_model
Chromosome:	Gm06
Start:	992266
stop:	994015
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g01570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G49320	AT	Annotation by Michelle Graham. TAIR10: unknown seed protein like 1 \| chr1:18246441-18247817 FORWARD LENGTH=280	SoyBase	E_val: 1.00E-66	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0000326	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03181	PFAM	BURP domain	JGI		ISS
UniRef100_G7J6J1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BURP domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J6J1_MEDTR	SoyBase	E_val: 2.00E-149	ISS
UniRef100_UPI0002339D1A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D1A related cluster n=1 Tax=unknown RepID=UPI0002339D1A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g01570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g01570

Paralog	Evidence	Comments
Glyma04g01500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g01570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g013400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g01570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g01570

Limit To All Plant Sequences

>Glyma06g01570.2   sequence type=CDS   gene model=Glyma06g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTTGGATTTGCTTCTTGGAGATTCATCCCATGCACCCTGGTTGCCTTTTTGATTCTACAAGACAGTGGAGCTAGAAAGATAGCTACAACATCTGGGAAAGAAATTCAACTGAAGGAAGAAGTATCCTATGATTTGCAAAAGCTTGCAACAGAGGGTCTTGTACTTGACAGTATTATTCAGCTCGAAGGCGCTGATATAGAAAAGAAGAAGCATGTCCATAAAGATGATGATGAGGACGAGGACGATAGAGTGAAGAAAGGAATGGGATTTGACAAAGAAGAAGATGAGGAGGAGGATAAAGATGAACACAAAAAGATGGTTGGAAAGGATGTGCATGGTTATAAGCCATCTCACAAACACATGGACCTTGAACTGAATGTGTTCTTCACCCCAAATGATTTAAAGGTTGGGAAAATAATGCCCGTCTATTTTTCCAAGAAAAACTCCTCAACATCTCCAAAATTTCTGACCAGAGAAGAAGCTGACCAGATTCCTTTCTCATGCAAACACCTACCATCCCTTCTCAAATTCTTCTCCATCCCACAACACTCTCCCCAAGCCAAGGCAATGAAATATACCCTCAAACAATGTGAATTTGAACCCATGGAAGGAGAGACCAAGTTCTGTGCCACTTCGTTGGAGTCCTTGTTTGATTTTGCGCACTATCTGTTTGGGTCCAATGCACAATTCAAAGTTCTGACCACTGTCCATCTCACAAATTCAACAGCCCTGCTACAGAACTACACAATCTCAGAAGTGAAAGTGATTTCAGTTCCAAATGTTATAGGGTGTCACCCCATGCCTTACCCTTATGCAGTTTTTTACTGCCACAGTCAGCATAGTGACACCAATCTCTATGAGGTGATGGTAGAAGGTGAGAATGGAGGGAGAGTTCAAGCTGCAGCTATTTGCCACATGGACACCTCTAAGTGGGACCGGGACCACGTGTCCTTTCGTGTGCTCAAAGTTCAGCCGGGAACCTCACCTGTGTGTCACTTCTTCCCTCCTGATAATCTAGTCTGGGTGCCTTTGCCTCTGCCTCCATAA

Predicted protein sequences of Glyma06g01570

Limit To All Plant Sequences

>Glyma06g01570.2   sequence type=predicted peptide   gene model=Glyma06g01570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLGFASWRFIPCTLVAFLILQDSGARKIATTSGKEIQLKEEVSYDLQKLATEGLVLDSIIQLEGADIEKKKHVHKDDDEDEDDRVKKGMGFDKEEDEEEDKDEHKKMVGKDVHGYKPSHKHMDLELNVFFTPNDLKVGKIMPVYFSKKNSSTSPKFLTREEADQIPFSCKHLPSLLKFFSIPQHSPQAKAMKYTLKQCEFEPMEGETKFCATSLESLFDFAHYLFGSNAQFKVLTTVHLTNSTALLQNYTISEVKVISVPNVIGCHPMPYPYAVFYCHSQHSDTNLYEVMVEGENGGRVQAAAICHMDTSKWDRDHVSFRVLKVQPGTSPVCHFFPPDNLVWVPLPLPP*

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